PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020478-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 235aa    MW: 25884.5 Da    PI: 4.8307
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020478-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-172576155
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  WALNUT_00020478-RA 25 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDMAAIEYRG 76
                        89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-122576IPR001471AP2/ERF domain
CDDcd000181.81E-162586No hitNo description
SuperFamilySSF541715.62E-182586IPR016177DNA-binding domain
PROSITE profilePS5103218.2682684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-182685IPR001471AP2/ERF domain
SMARTSM003802.1E-242690IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEGQSKEEYI SILRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  60
EEAAAAYDMA AIEYRGLNAV TNFDLSRYIK WLRPGNQNSP TNPNDSEPNT NNLEPGLSLV  120
SNQAANSSTT ATDMTLADPV LRPRPGAGGS ASSALELLFQ SSKFKEMLET TSVVDSSPPT  180
SQESEPPRRS FPDDIQTYFD CQDSGNLYAE SEDIIFGDLN SIASVPIFDC EHLGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067459.11e-103PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN49e-66AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLM1B4361e-101M1B436_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000367071e-100(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.24e-49AP2 family protein